How to Login to the PBIC Cluster
Login to the frontend machine for the cluster pbic.bham.ac.uk using VNC
To submit a job type (this is an eddy_cuda job using version 9.1 you can also submit an eddy_cuda job using eddy_cuda0.8 to submit using an older version of eddy_cuda) :
qsub -q gpu.q -b y eddy_cuda9.1 --imain= (eddy_openmp path options and data path)
To check the status of your jobs type:
qstat
To check the status of all user submitted jobs type:
qstat -u "*"
To see summary information on all PBIC queues:
qstat -f
To kill a job type:
qdel job_id
To kill all your jobs type:
qdel -u user_name
Note that the output of your jobs will be put in files named
jobname.oxxxx and jobname.exxxx
where jobname is the name from the #$ -N jobname command and xxxx is the job number.